Package: infectiousR 0.1.2

infectiousR: Access Infectious and Epidemiological Data via 'disease.sh API'

Provides functions to access real-time infectious disease data from the 'disease.sh API', including COVID-19 global, US states, continent, and country statistics, vaccination coverage, influenza-like illness data from the Centers for Disease Control and Prevention (CDC), and more. Also includes curated datasets on a variety of infectious diseases such as influenza, measles, dengue, Ebola, tuberculosis, meningitis, AIDS, and others. The package supports epidemiological research and data analysis by combining API access with high-quality historical and survey datasets on infectious diseases. For more details on the 'disease.sh API', see <https://disease.sh/>.

Authors:Renzo Caceres Rossi [aut, cre]

infectiousR_0.1.2.tar.gz
infectiousR_0.1.2.zip(r-4.7)infectiousR_0.1.2.zip(r-4.6)infectiousR_0.1.2.zip(r-4.5)
infectiousR_0.1.2.tgz(r-4.6-any)infectiousR_0.1.2.tgz(r-4.5-any)
infectiousR_0.1.2.tar.gz(r-4.7-any)infectiousR_0.1.2.tar.gz(r-4.6-any)
infectiousR_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
infectiousR/json (API)
NEWS

# Install 'infectiousR' in R:
install.packages('infectiousR', repos = c('https://lightbluetitan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lightbluetitan/infectiousr/issues

Pkgdown/docs site:https://lightbluetitan.github.io

Datasets:

On CRAN:

Conda:

5.21 score 8 stars 13 scripts 1.5k downloads 46 exports 12 dependencies

Last updated from:6d2357d3c9. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK151
source / vignettesOK183
linux-release-x86_64OK134
macos-release-arm64OK75
macos-oldrel-arm64OK123
windows-develOK97
windows-releaseOK83
windows-oldrelOK97
wasm-releaseOK109

Exports:active_hepatitis_dfaids_azt_dfbcg_vaccine_dfcampy_infections_tschina_dengue_tbl_dfcontagious_diseases_dfcovid_mortality_dfcovid_new_york_dfcovid_severity_dfdiphtheria_philly_dfebola_cases_dfebola_sleone_dfebola_survey_tbl_dfecoli_infections_dfehec_infections_dfflu_enrich_dffungal_infections_dfget_covid_stats_by_continentget_covid_stats_by_countryget_covid_stats_by_country_nameget_covid_stats_for_stateget_global_covid_statsget_influenza_cdc_iliget_us_states_covid_statsgonorrhea_ma_dfhepatitisA_dfindia_dengue_tbl_dfinfluenza_ice_dfinfluenza_infections_dfinfluenza_pneumonia_tsinfluenza_vax_survey_dfkorea_dengue_tbl_dfmalaria_mice_dfmeasles_infections_dfmeasles_survey_dfmeningitis_dfrubella_austria_dfrubella_peru_dfsars_canada_dfsmallpox_nigeria_dfspanish_flu_dfstreptomycin_tbl_dfus_covid_cases_dfview_datasets_infectiousRzika_girardot_dfzika_sanandres_df

Dependencies:askpasscpp11curlgenericshttrjsonlitelubridatemimeopensslR6systimechange

infectiousR: Access Infectious and Epidemiological Data via disease.sh API

Rendered frominfectiousR_vignette.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2025-11-09
Started: 2025-06-09

Readme and manuals

Help Manual

Help pageTopics
Chronic Active Hepatitis Clinical Trialactive_hepatitis_df
AIDS Symptoms and AZT Use Dataaids_azt_df
BCG Vaccine Effectiveness Against Tuberculosisbcg_vaccine_df
Campylobacter Infections Time Seriescampy_infections_ts
Dengue Cases in Mainland China (2005–2020)china_dengue_tbl_df
Contagious Disease Data for US Statescontagious_diseases_df
COVID-19 Cardiovascular Mortalitycovid_mortality_df
New York City COVID-19 Datacovid_new_york_df
COVID-19 Cardiovascular Severitycovid_severity_df
Weekly Diphtheria Incidence in Philadelphiadiphtheria_philly_df
Time Series Counts of Ebola Casesebola_cases_df
Ebola Cases in Sierra Leone, Africaebola_sleone_df
Survey on Ebola Quarantineebola_survey_tbl_df
E. coli Infections Time Seriesecoli_infections_df
EHEC Infections Time Seriesehec_infections_df
Flu Enrichment Gene Dataflu_enrich_df
Fungal Infections Treatment Datafungal_infections_df
Get COVID-19 Statistics for All Continentsget_covid_stats_by_continent
Get COVID-19 Statistics for All Countriesget_covid_stats_by_country
Get COVID-19 Statistics for a Specific Countryget_covid_stats_by_country_name
Get COVID-19 Statistics for Specific US State(s)get_covid_stats_for_state
Get Global COVID-19 Statisticsget_global_covid_stats
Get CDC Influenza-like Illness (ILI) Dataget_influenza_cdc_ili
Get COVID-19 Statistics for U.S. States and Territoriesget_us_states_covid_stats
Weekly Gonorrhea Cases in Massachusettsgonorrhea_ma_df
Hepatitis A Prevalence in BulgariahepatitisA_df
Dengue/DHF Situation in India Since 2017india_dengue_tbl_df
infectiousR: Access Infectious and Epidemiological Data via 'disease.sh API'infectiousR-package infectiousR
Monthly Influenza Incidence in Icelandinfluenza_ice_df
Influenza Infections Time Seriesinfluenza_infections_df
US Pneumonia and Influenza Death Ratesinfluenza_pneumonia_ts
Influenza Vaccination Surveyinfluenza_vax_survey_df
Imported Dengue Cases in Koreakorea_dengue_tbl_df
Daily Measures of Malaria-Infected Micemalaria_mice_df
Measles Infections Time Seriesmeasles_infections_df
Measles Non-Vaccination Parent Surveymeasles_survey_df
Meningococcal Data with Missing Responsemeningitis_df
Rubella Prevalence in Austrian Malesrubella_austria_df
Rubella in Peru Datarubella_peru_df
Severe Acute Respiratory Syndrome in Canada, 2003sars_canada_df
Smallpox in Abakaliki, Nigeria, 1967smallpox_nigeria_df
Daily 1918 Flu Deathsspanish_flu_df
Tuberculosis Streptomycin RCT (1948)streptomycin_tbl_df
US Lab-Confirmed COVID-19 Casesus_covid_cases_df
View Available Datasets in infectiousRview_datasets_infectiousR
Zika in Girardot, Colombia, 2015zika_girardot_df
Zika in San Andres, Colombia, 2015zika_sanandres_df